Manila to Palawan: El Nido and Coron Flight Guide (2026)

Stunning view of Coron Island's turquoise waters with rock formations and boats. (photo by Leon Macapagal on Pexels)

Palawan is the Philippines\’ most spectacular island province — dramatic limestone karsts, electric-blue lagoons, and some of Asia\’s best island-hopping. It\’s consistently rated among the world\’s top islands and is the reason many travelers fly into Manila in the first place. Getting there is straightforward: a direct 1-hour flight from Manila to either Puerto Princesa or Busuanga (for Coron). Here\’s the full guide to both gateways.

🎟️ Search Flights Manila → Palawan tickets on 12Go →


El Nido vs Coron: Which Part of Palawan?

Palawan has two main tourist areas, each with a distinct character and different airports:

El NidoCoron
AirportEl Nido Airport (ENI) or Puerto Princesa (PPS) + vanBusuanga Airport (USU)
Known forLimestone karsts, hidden lagoons, Big LagoonShipwreck diving, Kayangan Lake, Twin Lagoon
Island hopping4 tour routes (A, B, C, D)Coron Island tour circuits
VibeBackpacker + mid-range, more developedQuieter, diving focus
Best forFirst-time Palawan visitors, non-diversDivers, couples, fewer crowds

Getting to El Nido from Manila

Option A: Fly Manila → El Nido Airport (ENI) — Fastest

Air Swift operates direct flights from Manila (T4) to El Nido Airport (ENI) — approximately 1 hour 10 minutes. This is the most convenient option, landing you directly in El Nido town. Fares from ~PHP 3,500–6,000 (~$60–105 USD) one way. Air Swift is the only carrier on this route — book well ahead, especially December–April.

Option B: Fly Manila → Puerto Princesa (PPS) + Van

Fly from Manila to Puerto Princesa on Cebu Pacific, AirAsia, or Philippine Airlines (~1 hour, from ~PHP 1,200–3,500 / $20–60 USD), then take a shared van north to El Nido (~5–6 hours, ~PHP 700–900 / $12–16 USD). This is cheaper total but takes much longer. Puerto Princesa itself is worth a night for the Underground River day trip.

🎟️ Search Flights MNL → PPS tickets on 12Go →


Getting to Coron from Manila

Fly from Manila to Busuanga Airport (USU) — approximately 1 hour. Cebu Pacific, AirAsia, and Philippine Airlines all serve this route. Fares from ~PHP 1,500–4,000 (~$26–70 USD). From Busuanga Airport, a van and boat transfer to Coron town takes approximately 1 hour and costs around PHP 250–350 (~$4–6 USD).

✈️ [Travelpayouts widget: Flights MNL → USU (Busuanga/Coron) via Kiwi]


What to Do: El Nido Island Hopping

El Nido\’s island hopping is organized into four tour routes — A, B, C, and D — each visiting different lagoons, beaches, and snorkeling spots. Tour A (Big Lagoon, Small Lagoon, Secret Lagoon, Shimizu Island) is the most popular and best for first-timers. Tours run daily from El Nido town, ~PHP 1,200–1,500 per person for a shared boat including lunch and snorkeling gear.

  • Tour A: Big Lagoon, Small Lagoon, Secret Lagoon — most dramatic scenery
  • Tour B: Snake Island, Cudugnon Cave, Cathedral Cave — more secluded
  • Tour C: Hidden Beach, Secret Beach, Matinloc Shrine — furthest, least crowded
  • Tour D: Cadlao Lagoon, Paradise Beach — closest to town

What to Do: Coron Highlights

  • Kayangan Lake: Stunning freshwater lake inside limestone cliffs — the most photographed spot in the Philippines
  • Twin Lagoon: Two connected lagoons, swim through a low passage between them
  • Shipwreck diving: 12 Japanese WWII shipwrecks — one of Asia\’s best wreck diving destinations
  • Coron Island: Sacred Tagbanua tribal land — day trips only, no accommodation

Where to Stay

🏨 [Travelpayouts widget: Hotels in El Nido via Booking.com or Agoda]

🏨 [Travelpayouts widget: Hotels in Coron via Booking.com or Agoda]


Practical Tips

  • Book accommodation well ahead December–April — El Nido especially fills fast
  • Environmental fees: PHP 200 (~$3.50 USD) eco-tourism fee in El Nido, collected before island hopping
  • Cash: Bring enough PHP from Manila — ATMs in El Nido are limited and run out in peak season
  • Best months: November–May (dry season). June–October is typhoon season — island hopping often cancelled
  • El Nido to Coron: Ferry connects the two (~4 hours, ~PHP 2,200) — possible to combine both in one trip

Related Guides

This post contains affiliate links. When you book through them, we may earn a small commission at no extra cost to you.

Leave a Comment

Your email address will not be published. Required fields are marked *